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For both SE and PE data, fastp supports evaluating its duplication rate and removing duplicated reads/pairs. fastp considers one read as duplicated only if its all base pairs are identical as another one.
Sep 1, 2018 · Results: We developed fastp as an ultra-fast FASTQ preprocessor with useful quality control and data-filtering features. It can perform quality control, adapter trimming, quality filtering, per-read qual...
fastp - An ultra-fast all-in-one FASTQ preprocessor. BioQueue Encyclopedia provides details on the parameters, options, and curated usage examples for fastp.
Global trimming: fastp supports global trimming, which means trim all reads in the front or the tail. This function is useful since sometimes you want to drop some cycles of a sequencing run.
A search engine and annotation APIs for over 8,000,000 mutations in 100+ cancers from 200+ studies.
Sep 8, 2018 · In this paper, we introduced fastp, an ultra-fast all-in-one FASTQ preprocessor. fastp is a versatile tool that can perform quality profiling, read filtering, read pruning, adapter trimming, polyG/polyX ...
Install fastp with Anaconda.org. A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...).
fastpfastp is a FASTQ data pre-processing tool. The algorithm has functions for quality control, trimming of adapters, filtering by quality, and read pruning. It also supports multi-threading. The Authors claim fastp ...
Sep 9, 2025 · Fastp is an extremely fast, full-featured, and easy-to-use FASTQ data preprocessing software. Fastp is cloud-friendly as it takes up very little resources and can generate web-based reports.
In this paper, we introduced fastp, an ultra-fast all-in-one FASTQ preprocessor. fastp is a versatile tool that can perform quality profiling, read filtering, read pruning, adapter trimming, polyG tail trimming, UMI p...
